HL_9G5C_008

3D structure

PDB id

9G5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G5C_008 not in the Motif Atlas

Geometric match to HL_6M0X_001

Geometric discrepancy: 0.1002

The information below is about HL_6M0X_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9G5C|1|A|C|1023
9G5C|1|A|G|1024
9G5C|1|A|A|1025
9G5C|1|A|A|1026
9G5C|1|A|A|1027
9G5C|1|A|G|1028

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain L

28S ribosomal protein S15, mitochondrial

Chain Q

28S ribosomal protein S21, mitochondrial