HL_9G8O_003

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9G8O|1|S2|U|160, 9G8O|1|S2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8O_003 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.2457

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9G8O|1|S2|G|156
9G8O|1|S2|U|157
9G8O|1|S2|A|158
9G8O|1|S2|A|159
9G8O|1|S2|U|160
9G8O|1|S2|U|161
9G8O|1|S2|C|162

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24