HL_9G8O_004

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

9G8O|1|S2|U|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8O_004 not in the Motif Atlas

Homologous match to HL_8P9A_193

Geometric discrepancy: 0.5658

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

9G8O|1|S2|C|195
9G8O|1|S2|C|196
9G8O|1|S2|U|197
9G8O|1|S2|U|198
9G8O|1|S2|C|199
9G8O|1|S2|G|200
9G8O|1|S2|C|201
9G8O|1|S2|G|202
9G8O|1|S2|G|203
9G8O|1|S2|G|204

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8