HL_9G8O_016
3D structure
- PDB id
- 9G8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 40S ribosome bound by a SKI238-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCCGAGCCG
- Length
- 9 nucleotides
- Bulged bases
- 9G8O|1|S2|G|836, 9G8O|1|S2|A|837, 9G8O|1|S2|G|838, 9G8O|1|S2|C|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G8O_016 not in the Motif Atlas
- Geometric match to HL_2Y8Y_001
- Geometric discrepancy: 0.342
- The information below is about HL_2Y8Y_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
9G8O|1|S2|C|833
9G8O|1|S2|C|834
9G8O|1|S2|C|835
9G8O|1|S2|G|836
9G8O|1|S2|A|837
9G8O|1|S2|G|838
9G8O|1|S2|C|839
9G8O|1|S2|C|840
9G8O|1|S2|G|841
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SY
- 40S ribosomal protein S24
Coloring options: