HL_9G8O_032

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGC

Length

37 nucleotides

Bulged bases

9G8O|1|S2|G|1754, 9G8O|1|S2|G|1757, 9G8O|1|S2|C|1762, 9G8O|1|S2|G|1763, 9G8O|1|S2|G|1764, 9G8O|1|S2|C|1765, 9G8O|1|S2|C|1766, 9G8O|1|S2|C|1767, 9G8O|1|S2|A|1768, 9G8O|1|S2|C|1769, 9G8O|1|S2|G|1770, 9G8O|1|S2|G|1771, 9G8O|1|S2|C|1773, 9G8O|1|S2|C|1774, 9G8O|1|S2|U|1775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8O|1|S2|G|1749
9G8O|1|S2|C|1750
9G8O|1|S2|C|1751
9G8O|1|S2|C|1752
9G8O|1|S2|C|1753
9G8O|1|S2|G|1754
9G8O|1|S2|C|1755
9G8O|1|S2|C|1756
9G8O|1|S2|G|1757
9G8O|1|S2|G|1758
9G8O|1|S2|G|1759
9G8O|1|S2|G|1760
9G8O|1|S2|U|1761
9G8O|1|S2|C|1762
9G8O|1|S2|G|1763
9G8O|1|S2|G|1764
9G8O|1|S2|C|1765
9G8O|1|S2|C|1766
9G8O|1|S2|C|1767
9G8O|1|S2|A|1768
9G8O|1|S2|C|1769
9G8O|1|S2|G|1770
9G8O|1|S2|G|1771
9G8O|1|S2|C|1772
9G8O|1|S2|C|1773
9G8O|1|S2|C|1774
9G8O|1|S2|U|1775
9G8O|1|S2|G|1776
9G8O|1|S2|G|1777
9G8O|1|S2|C|1778
9G8O|1|S2|G|1779
9G8O|1|S2|G|1780
9G8O|1|S2|A|1781
9G8O|1|S2|G|1782
9G8O|1|S2|C|1783
9G8O|1|S2|G|1784
9G8O|1|S2|C|1785

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6