HL_9G8O_035

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCAGCCCC

Length

9 nucleotides

Bulged bases

9G8O|1|X|C|113, 9G8O|1|X|C|116, 9G8O|1|X|C|117

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8O|1|X|G|111
9G8O|1|X|G|112
9G8O|1|X|C|113
9G8O|1|X|A|114
9G8O|1|X|G|115
9G8O|1|X|C|116
9G8O|1|X|C|117
9G8O|1|X|C|118
9G8O|1|X|C|119

Current chains

Chain X

CrPV-IRES RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SZ

40S ribosomal protein S25