HL_9GGR_012

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9GGR|1|0|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3497

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9GGR|1|0|G|462
9GGR|1|0|U|463
9GGR|1|0|U|464
9GGR|1|0|A|465
9GGR|1|0|A|466
9GGR|1|0|U|467
9GGR|1|0|A|468
9GGR|1|0|C|469
9GGR|1|0|C|470

Current chains

Chain 0

16S ribosomal RNA

Nearby chains