HL_9GGR_027

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9GGR|1|0|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_027 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.2459

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9GGR|1|0|U|1165
9GGR|1|0|G|1166
9GGR|1|0|A|1167
9GGR|1|0|U|1168
9GGR|1|0|A|1169
9GGR|1|0|A|1170
9GGR|1|0|A|1171

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain 1

Small ribosomal subunit protein uS2

Chain v

Small ribosomal subunit protein bS21