HL_9GGR_036
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGUUGGUUAG
- Length
- 11 nucleotides
- Bulged bases
- 9GGR|1|A3|U|16, 9GGR|1|A3|U|17, 9GGR|1|A3|G|18, 9GGR|1|A3|G|19, 9GGR|1|A3|U|20, 9GGR|1|A3|U|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GGR_036 not in the Motif Atlas
- Homologous match to HL_5AXM_001
- Geometric discrepancy: 0.1741
- The information below is about HL_5AXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9GGR|1|A3|C|13
9GGR|1|A3|A|14
9GGR|1|A3|G|15
9GGR|1|A3|U|16
9GGR|1|A3|U|17
9GGR|1|A3|G|18
9GGR|1|A3|G|19
9GGR|1|A3|U|20
9GGR|1|A3|U|21
9GGR|1|A3|A|22
9GGR|1|A3|G|23
Current chains
- Chain A3
- A-site tRNA
Nearby chains
- Chain AU
- Transfer RNA; tRNA
- Chain AV
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: