HL_9GGR_077

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9GGR|1|AV|U|138, 9GGR|1|AV|U|139, 9GGR|1|AV|G|141

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_077 not in the Motif Atlas

Geometric match to HL_4WF9_037

Geometric discrepancy: 0.3478

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

9GGR|1|AV|U|137
9GGR|1|AV|U|138
9GGR|1|AV|U|139
9GGR|1|AV|C|140
9GGR|1|AV|G|141
9GGR|1|AV|A|142

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ao

Large ribosomal subunit protein uL23