HL_9GGR_087

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_087 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.1208

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9GGR|1|AV|C|462
9GGR|1|AV|G|463
9GGR|1|AV|U|464
9GGR|1|AV|G|465
9GGR|1|AV|A|466
9GGR|1|AV|G|467

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Ax

Large ribosomal subunit protein bL34