HL_9GGR_093

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

9GGR|1|AV|U|646

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_093 not in the Motif Atlas

Homologous match to HL_5J7L_153

Geometric discrepancy: 0.1925

The information below is about HL_5J7L_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13529.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9GGR|1|AV|U|641
9GGR|1|AV|U|642
9GGR|1|AV|A|643
9GGR|1|AV|A|644
9GGR|1|AV|C|645
9GGR|1|AV|U|646
9GGR|1|AV|G|647

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Aw

Large ribosomal subunit protein bL33

Chain Ay

Large ribosomal subunit protein bL35