HL_9GGR_094

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_094 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1731

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9GGR|1|AV|G|712
9GGR|1|AV|G|713
9GGR|1|AV|U|714
9GGR|1|AV|A|715
9GGR|1|AV|A|716
9GGR|1|AV|C|717
9GGR|1|AV|A|718
9GGR|1|AV|C|719

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AN

Small ribosomal subunit protein uS15

Chain AX

Large ribosomal subunit protein uL2