HL_9GGR_112

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9GGR|1|AV|A|1614, 9GGR|1|AV|A|1616, 9GGR|1|AV|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_112 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.2051

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9GGR|1|AV|C|1612
9GGR|1|AV|G|1613
9GGR|1|AV|A|1614
9GGR|1|AV|C|1615
9GGR|1|AV|A|1616
9GGR|1|AV|C|1617
9GGR|1|AV|A|1618
9GGR|1|AV|G|1619

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain An

Large ribosomal subunit protein uL22

Chain Ax

Large ribosomal subunit protein bL34