HL_9GGR_130

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_130 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.1287

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GGR|1|AV|C|2374
9GGR|1|AV|G|2375
9GGR|1|AV|A|2376
9GGR|1|AV|A|2377
9GGR|1|AV|A|2378
9GGR|1|AV|G|2379

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Aj

Large ribosomal subunit protein uL18