HL_9GGR_168

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

9GGR|1|N|U|747, 9GGR|1|N|A|751, 9GGR|1|N|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_168 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1895

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

9GGR|1|N|U|744
9GGR|1|N|G|745
9GGR|1|N|U|746
9GGR|1|N|U|747
9GGR|1|N|G|748
9GGR|1|N|A|749
9GGR|1|N|A|750
9GGR|1|N|A|751
9GGR|1|N|A|752
9GGR|1|N|A|753

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain f

Large ribosomal subunit protein uL22

Chain n

Large ribosomal subunit protein bL32

Chain p

Large ribosomal subunit protein bL34

Chain s

VemP nascent chain