HL_9GGR_172

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_172 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.2017

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9GGR|1|N|G|978
9GGR|1|N|A|979
9GGR|1|N|A|980
9GGR|1|N|A|981
9GGR|1|N|C|982
9GGR|1|N|A|983
9GGR|1|N|A|984
9GGR|1|N|C|985

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein bL20

Chain e

Large ribosomal subunit protein bL21