HL_9GGR_205

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_205 not in the Motif Atlas

Homologous match to HL_9DFE_058

Geometric discrepancy: 0.1768

The information below is about HL_9DFE_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GGR|1|N|A|2471
9GGR|1|N|G|2472
9GGR|1|N|U|2473
9GGR|1|N|U|2474
9GGR|1|N|C|2475
9GGR|1|N|A|2476
9GGR|1|N|U|2477
9GGR|1|N|A|2478
9GGR|1|N|U|2479

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain T

Large ribosomal subunit protein uL6

Chain r

Large ribosomal subunit protein bL36A