HL_9GGR_213

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9GGR|1|N|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_213 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1224

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GGR|1|N|G|2819
9GGR|1|N|A|2820
9GGR|1|N|A|2821
9GGR|1|N|G|2822
9GGR|1|N|A|2823
9GGR|1|N|C|2824
9GGR|1|N|G|2825
9GGR|1|N|A|2826
9GGR|1|N|C|2827

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain a

Large ribosomal subunit protein bL17