HL_9GHA_015

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9GHA|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHA_015 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.4356

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9GHA|1|A|G|462
9GHA|1|A|U|463
9GHA|1|A|U|464
9GHA|1|A|A|465
9GHA|1|A|A|466
9GHA|1|A|U|467
9GHA|1|A|A|468
9GHA|1|A|C|469
9GHA|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains