HL_9GHA_072

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

9GHA|1|a|A|1614, 9GHA|1|a|A|1616, 9GHA|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHA_072 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0365

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9GHA|1|a|C|1612
9GHA|1|a|G|1613
9GHA|1|a|A|1614
9GHA|1|a|C|1615
9GHA|1|a|A|1616
9GHA|1|a|C|1617
9GHA|1|a|6MZ|1618
9GHA|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain r

50S ribosomal protein L22