3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
CGACAC(6MZ)G
Length
8 nucleotides
Bulged bases
9GHA|1|a|A|1614, 9GHA|1|a|A|1616, 9GHA|1|a|6MZ|1618
QA status
Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GHA_072 not in the Motif Atlas
Homologous match to HL_5J7L_173
Geometric discrepancy: 0.0365
The information below is about HL_5J7L_173
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

9GHA|1|a|C|1612
9GHA|1|a|G|1613
9GHA|1|a|A|1614
9GHA|1|a|C|1615
9GHA|1|a|A|1616
9GHA|1|a|C|1617
9GHA|1|a|6MZ|1618
9GHA|1|a|G|1619

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain r
50S ribosomal protein L22

Coloring options:


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