HL_9GHA_075

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

9GHA|1|a|U|1729, 9GHA|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHA_075 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.2983

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9GHA|1|a|C|1727
9GHA|1|a|C|1728
9GHA|1|a|U|1729
9GHA|1|a|C|1730
9GHA|1|a|G|1731
9GHA|1|a|C|1732
9GHA|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains