HL_9GHB_008

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9GHB|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHB_008 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.1364

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9GHB|1|A|C|342
9GHB|1|A|U|343
9GHB|1|A|A|344
9GHB|1|A|C|345
9GHB|1|A|G|346
9GHB|1|A|G|347

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

Elongation factor G

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19