HL_9GHB_024

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9GHB|1|A|C|1136, 9GHB|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHB_024 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3272

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9GHB|1|A|G|1134
9GHB|1|A|U|1135
9GHB|1|A|C|1136
9GHB|1|A|C|1137
9GHB|1|A|G|1138
9GHB|1|A|G|1139
9GHB|1|A|C|1140

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9