HL_9GHB_031
3D structure
- PDB id
- 9GHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9GHB|1|Z|G|18, 9GHB|1|Z|G|19, 9GHB|1|Z|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GHB_031 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1999
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9GHB|1|Z|C|13
9GHB|1|Z|A|14
9GHB|1|Z|G|15
9GHB|1|Z|C|16
9GHB|1|Z|C|17
9GHB|1|Z|U|17|||A
9GHB|1|Z|G|18
9GHB|1|Z|G|19
9GHB|1|Z|U|20
9GHB|1|Z|A|21
9GHB|1|Z|G|22
Current chains
- Chain Z
- tRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
Coloring options: