HL_9GHB_050
3D structure
- PDB id
- 9GHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9GHB|1|a|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GHB_050 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.0421
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9GHB|1|a|U|566
9GHB|1|a|U|567
9GHB|1|a|U|568
9GHB|1|a|U|569
9GHB|1|a|G|570
9GHB|1|a|U|571
9GHB|1|a|A|572
9GHB|1|a|U|573
9GHB|1|a|A|574
9GHB|1|a|A|575
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L15
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
- Chain z
- 50S ribosomal protein L32
Coloring options: