HL_9GHC_032
3D structure
- PDB id
- 9GHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GHC_032 not in the Motif Atlas
- Homologous match to HL_9DFC_104
- Geometric discrepancy: 0.1066
- The information below is about HL_9DFC_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9GHC|1|Z|G|31
9GHC|1|Z|C|32
9GHC|1|Z|U|33
9GHC|1|Z|C|34
9GHC|1|Z|A|35
9GHC|1|Z|U|36
9GHC|1|Z|A|37
9GHC|1|Z|A|38
9GHC|1|Z|C|39
Current chains
- Chain Z
- tRNA
Nearby chains
- Chain 9
- mRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 30S ribosomal protein S9
Coloring options: