HL_9GHC_078

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

9GHC|1|a|C|1870

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHC_078 not in the Motif Atlas

Homologous match to HL_7A0S_047

Geometric discrepancy: 0.2979

The information below is about HL_7A0S_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9GHC|1|a|C|1868
9GHC|1|a|G|1869
9GHC|1|a|C|1870
9GHC|1|a|A|1871
9GHC|1|a|A|1872
9GHC|1|a|G|1873

Current chains

Chain a

23S rRNA

Nearby chains