HL_9GHD_011

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9GHD|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHD_011 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2815

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9GHD|1|A|G|462
9GHD|1|A|U|463
9GHD|1|A|U|464
9GHD|1|A|A|465
9GHD|1|A|A|466
9GHD|1|A|U|467
9GHD|1|A|A|468
9GHD|1|A|C|469
9GHD|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains