HL_9GHD_029

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9GHD|1|A|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHD_029 not in the Motif Atlas

Homologous match to HL_4LFB_031

Geometric discrepancy: 0.1978

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9GHD|1|A|C|1449
9GHD|1|A|U|1450
9GHD|1|A|U|1451
9GHD|1|A|C|1452
9GHD|1|A|G|1453
9GHD|1|A|G|1454

Current chains

Chain A

16S rRNA

Nearby chains