HL_9GHD_074

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

9GHD|1|a|U|1729, 9GHD|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHD_074 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.2965

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9GHD|1|a|C|1727
9GHD|1|a|C|1728
9GHD|1|a|U|1729
9GHD|1|a|C|1730
9GHD|1|a|G|1731
9GHD|1|a|C|1732
9GHD|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains