3D structure

PDB id
9GHD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CGAAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GHD_075 not in the Motif Atlas
Homologous match to HL_5J7L_177
Geometric discrepancy: 0.0603
The information below is about HL_5J7L_177
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_80709.3
Basepair signature
cWW-F-F-F
Number of instances in this motif group
11

Unit IDs

9GHD|1|a|C|1752
9GHD|1|a|G|1753
9GHD|1|a|A|1754
9GHD|1|a|A|1755
9GHD|1|a|G|1756

Current chains

Chain a
23S rRNA

Nearby chains

Chain o
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3306 s