HL_9GHD_078

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

9GHD|1|a|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHD_078 not in the Motif Atlas

Homologous match to HL_7A0S_047

Geometric discrepancy: 0.3042

The information below is about HL_7A0S_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GHD|1|a|C|1868
9GHD|1|a|G|1869
9GHD|1|a|C|1870
9GHD|1|a|A|1871
9GHD|1|a|A|1872
9GHD|1|a|G|1873

Current chains

Chain a

23S rRNA

Nearby chains