3D structure

PDB id
9GHD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CUUUAAG
Length
7 nucleotides
Bulged bases
9GHD|1|a|U|2797, 9GHD|1|a|A|2800
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GHD_097 not in the Motif Atlas
Homologous match to HL_5J7L_200
Geometric discrepancy: 0.2841
The information below is about HL_5J7L_200
Detailed Annotation
Other HL
Broad Annotation
Other HL
Motif group
HL_08100.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

9GHD|1|a|C|2795
9GHD|1|a|U|2796
9GHD|1|a|U|2797
9GHD|1|a|U|2798
9GHD|1|a|A|2799
9GHD|1|a|A|2800
9GHD|1|a|G|2801

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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