HL_9GHE_011

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9GHE|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHE_011 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2774

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9GHE|1|A|G|462
9GHE|1|A|U|463
9GHE|1|A|U|464
9GHE|1|A|A|465
9GHE|1|A|A|466
9GHE|1|A|U|467
9GHE|1|A|A|468
9GHE|1|A|C|469
9GHE|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains