HL_9GHE_025

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9GHE|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHE_025 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2526

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9GHE|1|A|U|1165
9GHE|1|A|G|1166
9GHE|1|A|A|1167
9GHE|1|A|U|1168
9GHE|1|A|A|1169
9GHE|1|A|A|1170
9GHE|1|A|A|1171

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2