HL_9GHE_027

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHE_027 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0592

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9GHE|1|A|C|1314
9GHE|1|A|U|1315
9GHE|1|A|G|1316
9GHE|1|A|C|1317
9GHE|1|A|A|1318
9GHE|1|A|A|1319
9GHE|1|A|C|1320
9GHE|1|A|U|1321
9GHE|1|A|C|1322
9GHE|1|A|G|1323

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19