HL_9GHE_083

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9GHE|1|a|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHE_083 not in the Motif Atlas

Homologous match to HL_9DFE_051

Geometric discrepancy: 0.0846

The information below is about HL_9DFE_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9GHE|1|a|C|2248
9GHE|1|a|U|2249
9GHE|1|a|G|2250
9GHE|1|a|OMG|2251
9GHE|1|a|G|2252
9GHE|1|a|G|2253
9GHE|1|a|C|2254
9GHE|1|a|G|2255
9GHE|1|a|G|2256

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27