HL_9GHF_033
3D structure
- PDB id
- 9GHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GHF_033 not in the Motif Atlas
- Homologous match to HL_4YCO_003
- Geometric discrepancy: 0.0934
- The information below is about HL_4YCO_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9GHF|1|Z|G|53
9GHF|1|Z|U|54
9GHF|1|Z|U|55
9GHF|1|Z|C|56
9GHF|1|Z|A|57
9GHF|1|Z|A|58
9GHF|1|Z|A|59
9GHF|1|Z|U|60
9GHF|1|Z|C|61
Current chains
- Chain Z
- tRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: