HL_9GHF_071

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

9GHF|1|a|A|1614, 9GHF|1|a|A|1616, 9GHF|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHF_071 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0396

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9GHF|1|a|C|1612
9GHF|1|a|G|1613
9GHF|1|a|A|1614
9GHF|1|a|C|1615
9GHF|1|a|A|1616
9GHF|1|a|C|1617
9GHF|1|a|6MZ|1618
9GHF|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain r

50S ribosomal protein L22