HL_9GHF_092

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHF_092 not in the Motif Atlas

Homologous match to HL_9DFE_060

Geometric discrepancy: 0.0827

The information below is about HL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9GHF|1|a|C|2551
9GHF|1|a|OMU|2552
9GHF|1|a|G|2553
9GHF|1|a|U|2554
9GHF|1|a|U|2555
9GHF|1|a|C|2556
9GHF|1|a|G|2557

Current chains

Chain a

23S rRNA

Nearby chains