HL_9GHG_010

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9GHG|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_010 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.083

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

9GHG|1|A|C|348
9GHG|1|A|U|349
9GHG|1|A|G|350
9GHG|1|A|G|351
9GHG|1|A|A|352
9GHG|1|A|A|353
9GHG|1|A|A|354
9GHG|1|A|G|355

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L24