HL_9GHG_014

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9GHG|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0605

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9GHG|1|A|G|456
9GHG|1|A|G|457
9GHG|1|A|A|458
9GHG|1|A|C|459
9GHG|1|A|C|460
9GHG|1|A|A|461
9GHG|1|A|U|462
9GHG|1|A|C|463

Current chains

Chain A

23S rRNA

Nearby chains