HL_9GHG_017

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

9GHG|1|A|U|590, 9GHG|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.1383

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

9GHG|1|A|C|587
9GHG|1|A|G|588
9GHG|1|A|U|589
9GHG|1|A|U|590
9GHG|1|A|A|591
9GHG|1|A|A|592
9GHG|1|A|U|593
9GHG|1|A|G|594

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L13

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21