HL_9GHG_023

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGU(5MU)GAAAAG

Length

10 nucleotides

Bulged bases

9GHG|1|A|5MU|792, 9GHG|1|A|A|796, 9GHG|1|A|A|797

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_023 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.074

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9GHG|1|A|C|789
9GHG|1|A|G|790
9GHG|1|A|U|791
9GHG|1|A|5MU|792
9GHG|1|A|G|793
9GHG|1|A|A|794
9GHG|1|A|A|795
9GHG|1|A|A|796
9GHG|1|A|A|797
9GHG|1|A|G|798

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL32

Chain 7

50S ribosomal protein L34

Chain H

50S ribosomal protein L3

Chain V

50S ribosomal protein L22