HL_9GHG_024

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AGAAAUU

Length

7 nucleotides

Bulged bases

9GHG|1|A|A|826, 9GHG|1|A|U|829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_024 not in the Motif Atlas

Homologous match to HL_4WF9_024

Geometric discrepancy: 0.0875

The information below is about HL_4WF9_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9GHG|1|A|A|824
9GHG|1|A|G|825
9GHG|1|A|A|826
9GHG|1|A|A|827
9GHG|1|A|A|828
9GHG|1|A|U|829
9GHG|1|A|U|830

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2