HL_9GHG_027

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_027 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0673

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GHG|1|A|G|1022
9GHG|1|A|A|1023
9GHG|1|A|A|1024
9GHG|1|A|A|1025
9GHG|1|A|C|1026
9GHG|1|A|A|1027
9GHG|1|A|G|1028
9GHG|1|A|C|1029

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain B

5S ribosomal RNA; 5S rRNA

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21