HL_9GHG_028

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9GHG|1|A|A|1114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.1848

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GHG|1|A|C|1108
9GHG|1|A|U|1109
9GHG|1|A|U|1110
9GHG|1|A|A|1111
9GHG|1|A|G|1112
9GHG|1|A|A|1113
9GHG|1|A|A|1114
9GHG|1|A|G|1115
9GHG|1|A|C|1116
9GHG|1|A|A|1117
9GHG|1|A|G|1118

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Far1