HL_9GHG_033

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

9GHG|1|A|C|1362, 9GHG|1|A|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_033 not in the Motif Atlas

Homologous match to HL_9DFE_032

Geometric discrepancy: 0.0773

The information below is about HL_9DFE_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9GHG|1|A|G|1361
9GHG|1|A|C|1362
9GHG|1|A|U|1363
9GHG|1|A|C|1364
9GHG|1|A|G|1365
9GHG|1|A|U|1366
9GHG|1|A|C|1367

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22