HL_9GHG_035

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9GHG|1|A|U|1433, 9GHG|1|A|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_035 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1163

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GHG|1|A|G|1426
9GHG|1|A|U|1427
9GHG|1|A|U|1428
9GHG|1|A|G|1429
9GHG|1|A|A|1430
9GHG|1|A|U|1431
9GHG|1|A|A|1432
9GHG|1|A|U|1433
9GHG|1|A|U|1434
9GHG|1|A|C|1435

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23